J5_6GQB_010

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGACGUUU*AUCGUAAUGAU

Length

46 nucleotides

Bulged bases

6GQB|1|2|U|639, 6GQB|1|2|U|694, 6GQB|1|2|C|696, 6GQB|1|2|C|697, 6GQB|1|2|U|742, 6GQB|1|2|A|811, 6GQB|1|2|U|813, 6GQB|1|2|G|815, 6GQB|1|2|U|820, 6GQB|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|A|636
6GQB|1|2|C|637
6GQB|1|2|U|638
6GQB|1|2|U|639
6GQB|1|2|U|640
6GQB|1|2|G|641
*
6GQB|1|2|U|693
6GQB|1|2|U|694
6GQB|1|2|U|695
6GQB|1|2|C|696
6GQB|1|2|C|697
6GQB|1|2|U|698
6GQB|1|2|U|699
*
6GQB|1|2|G|739
6GQB|1|2|A|740
6GQB|1|2|C|741
6GQB|1|2|U|742
6GQB|1|2|U|743
6GQB|1|2|U|744
*
6GQB|1|2|A|807
6GQB|1|2|U|808
6GQB|1|2|A|809
6GQB|1|2|G|810
6GQB|1|2|A|811
6GQB|1|2|A|812
6GQB|1|2|U|813
6GQB|1|2|A|814
6GQB|1|2|G|815
6GQB|1|2|G|816
6GQB|1|2|A|817
6GQB|1|2|C|818
6GQB|1|2|G|819
6GQB|1|2|U|820
6GQB|1|2|U|821
6GQB|1|2|U|822
*
6GQB|1|2|A|850
6GQB|1|2|U|851
6GQB|1|2|C|852
6GQB|1|2|G|853
6GQB|1|2|U|854
6GQB|1|2|A|855
6GQB|1|2|A|856
6GQB|1|2|U|857
6GQB|1|2|G|858
6GQB|1|2|A|859
6GQB|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain AD

40S ribosomal protein S13

Chain AM

40S ribosomal protein S22-A

Chain R

60S ribosomal protein L19-A

Chain u

40S ribosomal protein S4-A

Chain x

40S ribosomal protein S7-A