J5_6GSK_003

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6GSK|1|14|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GSK_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0719

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6GSK|1|14|C|47
6GSK|1|14|G|48
6GSK|1|14|A|49
6GSK|1|14|U|50
6GSK|1|14|G|51
6GSK|1|14|A|52
6GSK|1|14|A|53
6GSK|1|14|G|54
*
6GSK|1|14|C|116
6GSK|1|14|G|117
6GSK|1|14|A|118
6GSK|1|14|A|119
6GSK|1|14|U|120
6GSK|1|14|G|121
*
6GSK|1|14|C|130
6GSK|1|14|G|131
*
6GSK|1|14|C|148
6GSK|1|14|A|149
6GSK|1|14|C|150
*
6GSK|1|14|G|176
6GSK|1|14|G|177
6GSK|1|14|G|178

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34