J5_6GSL_001

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GSL_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0777

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GSL|1|13|C|36
6GSL|1|13|U|37
6GSL|1|13|G|38
6GSL|1|13|G|39
*
6GSL|1|13|C|403
6GSL|1|13|U|404
6GSL|1|13|U|405
6GSL|1|13|G|406
*
6GSL|1|13|C|436
6GSL|1|13|U|437
6GSL|1|13|G|438
6GSL|1|13|A|439
6GSL|1|13|A|440
6GSL|1|13|C|442
*
6GSL|1|13|G|492
6GSL|1|13|G|493
6GSL|1|13|U|494
6GSL|1|13|A|495
6GSL|1|13|A|496
6GSL|1|13|U|497
6GSL|1|13|A|498
6GSL|1|13|G|500
*
6GSL|1|13|C|545
6GSL|1|13|G|546
6GSL|1|13|A|547
6GSL|1|13|G|548

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3E

30S ribosomal protein S4

Chain 3I

30S ribosomal protein S12

Chain 69

50S ribosomal protein L9