J5_6GSL_006

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

6GSL|1|14|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GSL_006 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.0716

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6GSL|1|14|C|584
6GSL|1|14|G|585
6GSL|1|14|A|586
6GSL|1|14|C|587
6GSL|1|14|U|588
6GSL|1|14|C|589
*
6GSL|1|14|G|668
6GSL|1|14|G|669
6GSL|1|14|A|670
6GSL|1|14|C|671
*
6GSL|1|14|G|809
6GSL|1|14|U|810
6GSL|1|14|U|811
6GSL|1|14|C|812
*
6GSL|1|14|G|1195
6GSL|1|14|C|1196
*
6GSL|1|14|G|1250
6GSL|1|14|C|1251
6GSL|1|14|G|1252
6GSL|1|14|A|1253
6GSL|1|14|A|1254
6GSL|1|14|U|1255
6GSL|1|14|G|1256

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain 39

50S ribosomal protein L4

Chain 85

50S ribosomal protein L20

Chain 95

50S ribosomal protein L21

Chain M5

50S ribosomal protein L35