J5_6GXM_006
3D structure
- PDB id
- 6GXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- 6GXM|1|a|U|438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GXM_006 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.137
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6GXM|1|a|C|36
6GXM|1|a|U|37
6GXM|1|a|G|38
6GXM|1|a|G|39
*
6GXM|1|a|C|403
6GXM|1|a|G|404
6GXM|1|a|U|405
6GXM|1|a|G|406
*
6GXM|1|a|C|436
6GXM|1|a|U|437
6GXM|1|a|U|438
6GXM|1|a|U|439
6GXM|1|a|C|440
*
6GXM|1|a|G|497
6GXM|1|a|A|498
6GXM|1|a|A|499
6GXM|1|a|G|500
*
6GXM|1|a|C|545
6GXM|1|a|A|546
6GXM|1|a|A|547
6GXM|1|a|G|548
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain w
- Peptide chain release factor RF3
Coloring options: