J5_6GXO_008
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6GXO|1|a|A|60, 6GXO|1|a|A|109, 6GXO|1|a|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GXO_008 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1344
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GXO|1|a|C|58
6GXO|1|a|A|59
6GXO|1|a|A|60
6GXO|1|a|G|61
*
6GXO|1|a|C|106
6GXO|1|a|G|107
6GXO|1|a|G|108
6GXO|1|a|A|109
6GXO|1|a|C|110
6GXO|1|a|G|111
6GXO|1|a|G|112
6GXO|1|a|G|113
*
6GXO|1|a|C|314
6GXO|1|a|A|315
6GXO|1|a|C|316
*
6GXO|1|a|G|337
6GXO|1|a|A|338
6GXO|1|a|C|339
*
6GXO|1|a|G|350
6GXO|1|a|G|351
6GXO|1|a|C|352
6GXO|1|a|A|353
6GXO|1|a|G|354
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain p
- 30S ribosomal protein S16
- Chain t
- 30S ribosomal protein S20
- Chain w
- Peptide chain release factor RF3
Coloring options: