3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
6GXP|1|A|U|1758, 6GXP|1|A|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6GXP_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.1243
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6GXP|1|A|G|1674
6GXP|1|A|C|1675
6GXP|1|A|A|1676
6GXP|1|A|A|1677
6GXP|1|A|A|1678
6GXP|1|A|A|1679
6GXP|1|A|U|1680
6GXP|1|A|G|1681
6GXP|1|A|G|1682
*
6GXP|1|A|C|1706
6GXP|1|A|G|1707
*
6GXP|1|A|U|1751
6GXP|1|A|C|1752
*
6GXP|1|A|G|1756
6GXP|1|A|A|1757
6GXP|1|A|U|1758
6GXP|1|A|A|1759
6GXP|1|A|C|1760
6GXP|1|A|C|1761
6GXP|1|A|A|1762
6GXP|1|A|G|1763
6GXP|1|A|C|1764
*
6GXP|1|A|G|1988
6GXP|1|A|G|1989
6GXP|1|A|C|1990

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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