J5_6GZ4_007
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGUCUAAG*CUGCGAAUGGCU*AGAG*CAC*GGCAG
- Length
- 34 nucleotides
- Bulged bases
- 6GZ4|1|B1|A|92, 6GZ4|1|B1|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ4|1|B1|C|53
6GZ4|1|B1|A|54
6GZ4|1|B1|U|55
6GZ4|1|B1|G|56
6GZ4|1|B1|U|57
6GZ4|1|B1|C|58
6GZ4|1|B1|U|59
6GZ4|1|B1|A|60
6GZ4|1|B1|A|61
6GZ4|1|B1|G|62
*
6GZ4|1|B1|C|86
6GZ4|1|B1|U|87
6GZ4|1|B1|G|88
6GZ4|1|B1|C|89
6GZ4|1|B1|G|90
6GZ4|1|B1|A|91
6GZ4|1|B1|A|92
6GZ4|1|B1|U|93
6GZ4|1|B1|G|94
6GZ4|1|B1|G|95
6GZ4|1|B1|C|96
6GZ4|1|B1|U|97
*
6GZ4|1|B1|A|433
6GZ4|1|B1|G|434
6GZ4|1|B1|A|435
6GZ4|1|B1|G|436
*
6GZ4|1|B1|C|457
6GZ4|1|B1|A|458
6GZ4|1|B1|C|459
*
6GZ4|1|B1|G|470
6GZ4|1|B1|G|471
6GZ4|1|B1|C|472
6GZ4|1|B1|A|473
6GZ4|1|B1|G|474
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain AV
- ribosomal protein uL14
- Chain BE
- ribosomal protein eS4
- Chain BG
- ribosomal protein eS6
- Chain BI
- ribosomal protein eS8
- Chain BJ
- ribosomal protein uS4
- Chain BY
- ribosomal protein eS24
Coloring options: