J5_6GZ4_009

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUCUUGG*CCCUUGCC*GCGUUUAC*GAAUAAUGGAAUAGGACC*GCCAUGAU

Length

49 nucleotides

Bulged bases

6GZ4|1|B1|U|688, 6GZ4|1|B1|U|743, 6GZ4|1|B1|U|871, 6GZ4|1|B1|G|873, 6GZ4|1|B1|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|B1|A|685
6GZ4|1|B1|U|686
6GZ4|1|B1|C|687
6GZ4|1|B1|U|688
6GZ4|1|B1|U|689
6GZ4|1|B1|G|690
6GZ4|1|B1|G|691
*
6GZ4|1|B1|C|739
6GZ4|1|B1|C|740
6GZ4|1|B1|C|741
6GZ4|1|B1|U|742
6GZ4|1|B1|U|743
6GZ4|1|B1|G|744
6GZ4|1|B1|C|745
6GZ4|1|B1|C|746
*
6GZ4|1|B1|G|796
6GZ4|1|B1|C|797
6GZ4|1|B1|G|798
6GZ4|1|B1|U|799
6GZ4|1|B1|U|800
6GZ4|1|B1|U|801
6GZ4|1|B1|A|802
6GZ4|1|B1|C|803
*
6GZ4|1|B1|G|860
6GZ4|1|B1|A|861
6GZ4|1|B1|A|862
6GZ4|1|B1|U|863
6GZ4|1|B1|A|864
6GZ4|1|B1|A|865
6GZ4|1|B1|U|866
6GZ4|1|B1|G|867
6GZ4|1|B1|G|868
6GZ4|1|B1|A|869
6GZ4|1|B1|A|870
6GZ4|1|B1|U|871
6GZ4|1|B1|A|872
6GZ4|1|B1|G|873
6GZ4|1|B1|G|874
6GZ4|1|B1|A|875
6GZ4|1|B1|C|876
6GZ4|1|B1|C|877
*
6GZ4|1|B1|G|910
6GZ4|1|B1|C|911
6GZ4|1|B1|C|912
6GZ4|1|B1|A|913
6GZ4|1|B1|U|914
6GZ4|1|B1|G|915
6GZ4|1|B1|A|916
6GZ4|1|B1|U|917

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AR

ribosomal protein eL19

Chain BE

ribosomal protein eS4

Chain BH

ribosomal protein eS7

Chain BL

ribosomal protein uS17

Chain BN

ribosomal protein uS15

Chain BW

ribosomal protein uS8

Chain BX

ribosomal protein uS12