J5_6GZ4_011

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCGACUU*AUGCCGACGGGC*GUGC*GCCGAU*ACGACC

Length

36 nucleotides

Bulged bases

6GZ4|1|B1|C|125, 6GZ4|1|B1|G|126, 6GZ4|1|B1|C|142, 6GZ4|1|B1|U|143, 6GZ4|1|B1|U|214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ4|1|B1|G|123
6GZ4|1|B1|U|124
6GZ4|1|B1|C|125
6GZ4|1|B1|G|126
6GZ4|1|B1|A|141
6GZ4|1|B1|C|142
6GZ4|1|B1|U|143
6GZ4|1|B1|U|144
*
6GZ4|1|B1|A|175
6GZ4|1|B1|U|176
6GZ4|1|B1|G|177
6GZ4|1|B1|C|178
6GZ4|1|B1|C|179
6GZ4|1|B1|G|180
6GZ4|1|B1|A|181
6GZ4|1|B1|C|182
6GZ4|1|B1|G|183
6GZ4|1|B1|G|184
6GZ4|1|B1|G|185
6GZ4|1|B1|C|186
*
6GZ4|1|B1|G|213
6GZ4|1|B1|U|214
6GZ4|1|B1|G|215
6GZ4|1|B1|C|216
*
6GZ4|1|B1|G|309
6GZ4|1|B1|C|310
6GZ4|1|B1|C|311
6GZ4|1|B1|G|312
6GZ4|1|B1|A|313
6GZ4|1|B1|U|314
*
6GZ4|1|B1|A|336
6GZ4|1|B1|C|337
6GZ4|1|B1|G|338
6GZ4|1|B1|A|339
6GZ4|1|B1|C|340
6GZ4|1|B1|C|341

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain AW

ribosomal protein eL24

Chain BE

ribosomal protein eS4

Chain BG

ribosomal protein eS6

Chain BI

ribosomal protein eS8