J5_6GZQ_010
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UUUA*UUUG*CG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 6GZQ|1|A1|U|2100, 6GZQ|1|A1|G|2442, 6GZQ|1|A1|G|2443, 6GZQ|1|A1|A|2444, 6GZQ|1|A1|U|2445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GZQ_010 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.1614
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6GZQ|1|A1|U|2098
6GZQ|1|A1|U|2099
6GZQ|1|A1|U|2100
6GZQ|1|A1|A|2101
*
6GZQ|1|A1|U|2257
6GZQ|1|A1|U|2258
6GZQ|1|A1|U|2259
6GZQ|1|A1|G|2260
*
6GZQ|1|A1|C|2272
6GZQ|1|A1|G|2273
*
6GZQ|1|A1|C|2295
6GZQ|1|A1|G|2296
*
6GZQ|1|A1|C|2441
6GZQ|1|A1|G|2442
6GZQ|1|A1|G|2443
6GZQ|1|A1|A|2444
6GZQ|1|A1|U|2445
6GZQ|1|A1|A|2446
6GZQ|1|A1|A|2447
6GZQ|1|A1|A|2448
6GZQ|1|A1|A|2449
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain C1
- 50S ribosomal protein L2
- Chain K1
- 50S ribosomal protein L15
- Chain V1
- 50S ribosomal protein L27
- Chain W1
- 50S ribosomal protein L28
Coloring options: