J5_6GZQ_011

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6GZQ_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.1425

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GZQ|1|A2|C|36
6GZQ|1|A2|U|37
6GZQ|1|A2|G|38
6GZQ|1|A2|G|39
*
6GZQ|1|A2|C|398
6GZQ|1|A2|U|399
6GZQ|1|A2|U|400
6GZQ|1|A2|G|401
*
6GZQ|1|A2|C|431
6GZQ|1|A2|U|432
6GZQ|1|A2|G|433
6GZQ|1|A2|A|434
6GZQ|1|A2|A|435
6GZQ|1|A2|C|436
*
6GZQ|1|A2|G|476
6GZQ|1|A2|G|477
6GZQ|1|A2|U|478
6GZQ|1|A2|A|479
6GZQ|1|A2|A|480
6GZQ|1|A2|U|481
6GZQ|1|A2|A|482
6GZQ|1|A2|G|483
*
6GZQ|1|A2|C|528
6GZQ|1|A2|G|529
6GZQ|1|A2|A|530
6GZQ|1|A2|G|531

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain D2

30S ribosomal protein S4

Chain L2

30S ribosomal protein S12