J5_6GZQ_012
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6GZQ|1|A2|A|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GZQ_012 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.2769
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6GZQ|1|A2|C|58
6GZQ|1|A2|A|59
6GZQ|1|A2|A|60
6GZQ|1|A2|G|61
*
6GZQ|1|A2|C|99
6GZQ|1|A2|G|100
6GZQ|1|A2|G|101
6GZQ|1|A2|A|102
6GZQ|1|A2|C|103
6GZQ|1|A2|G|104
6GZQ|1|A2|G|105
6GZQ|1|A2|G|106
*
6GZQ|1|A2|C|309
6GZQ|1|A2|A|310
6GZQ|1|A2|G|311
*
6GZQ|1|A2|C|332
6GZQ|1|A2|A|333
6GZQ|1|A2|C|334
*
6GZQ|1|A2|G|345
6GZQ|1|A2|G|346
6GZQ|1|A2|C|347
6GZQ|1|A2|A|348
6GZQ|1|A2|G|349
Current chains
- Chain A2
- 16S ribosomal RNA
Nearby chains
- Chain J1
- 50S ribosomal protein L14
- Chain O1
- 50S ribosomal protein L19
- Chain P2
- 30S ribosomal protein S16
- Chain T2
- 30S ribosomal protein S20
Coloring options: