J5_6GZX_005

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGAUGAAG*CGAAUGGG*CCCG*CAC*GGG

Length

26 nucleotides

Bulged bases

6GZX|1|A2|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|46
6GZX|1|A2|G|47
6GZX|1|A2|A|48
6GZX|1|A2|U|49
6GZX|1|A2|G|50
6GZX|1|A2|A|51
6GZX|1|A2|A|52
6GZX|1|A2|G|53
*
6GZX|1|A2|C|114
6GZX|1|A2|G|115
6GZX|1|A2|A|116
6GZX|1|A2|A|117
6GZX|1|A2|U|118
6GZX|1|A2|G|119
6GZX|1|A2|G|120
6GZX|1|A2|G|121
*
6GZX|1|A2|C|126
6GZX|1|A2|C|127
6GZX|1|A2|C|128
6GZX|1|A2|G|129
*
6GZX|1|A2|C|148
6GZX|1|A2|A|149
6GZX|1|A2|C|150
*
6GZX|1|A2|G|166
6GZX|1|A2|G|167
6GZX|1|A2|G|168

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain S2

50S ribosomal protein L23

Chain c2

50S ribosomal protein L34