J5_6GZX_008

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCGACUC*GGACC*GGUUCUC*GAGCGUUCC*GAAGUGCGAAUGC

Length

41 nucleotides

Bulged bases

6GZX|1|A2|C|861, 6GZX|1|A2|G|1296, 6GZX|1|A2|U|1303

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|608
6GZX|1|A2|C|609
6GZX|1|A2|G|610
6GZX|1|A2|A|611
6GZX|1|A2|C|612
6GZX|1|A2|U|613
6GZX|1|A2|C|614
*
6GZX|1|A2|G|717
6GZX|1|A2|G|718
6GZX|1|A2|A|719
6GZX|1|A2|C|720
6GZX|1|A2|C|721
*
6GZX|1|A2|G|857
6GZX|1|A2|G|858
6GZX|1|A2|U|859
6GZX|1|A2|U|860
6GZX|1|A2|C|861
6GZX|1|A2|U|862
6GZX|1|A2|C|863
*
6GZX|1|A2|G|1240
6GZX|1|A2|A|1241
6GZX|1|A2|G|1242
6GZX|1|A2|C|1243
6GZX|1|A2|G|1244
6GZX|1|A2|U|1245
6GZX|1|A2|U|1246
6GZX|1|A2|C|1247
6GZX|1|A2|C|1248
*
6GZX|1|A2|G|1293
6GZX|1|A2|A|1294
6GZX|1|A2|A|1295
6GZX|1|A2|G|1296
6GZX|1|A2|U|1297
6GZX|1|A2|G|1298
6GZX|1|A2|C|1299
6GZX|1|A2|G|1300
6GZX|1|A2|A|1301
6GZX|1|A2|A|1302
6GZX|1|A2|U|1303
6GZX|1|A2|G|1304
6GZX|1|A2|C|1305

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain K2

50S ribosomal protein L15

Chain P2

50S ribosomal protein L20

Chain Q2

50S ribosomal protein L21

Chain d2

50S ribosomal protein L35