J5_6GZX_009

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCAAGUUGGC*GUGCU*AGCC*GUGAACAGG*CGC

Length

31 nucleotides

Bulged bases

6GZX|1|A2|C|1724, 6GZX|1|A2|G|1791, 6GZX|1|A2|G|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|1723
6GZX|1|A2|C|1724
6GZX|1|A2|A|1725
6GZX|1|A2|A|1726
6GZX|1|A2|G|1727
6GZX|1|A2|U|1728
6GZX|1|A2|U|1729
6GZX|1|A2|G|1730
6GZX|1|A2|G|1731
6GZX|1|A2|C|1732
*
6GZX|1|A2|G|1754
6GZX|1|A2|U|1755
6GZX|1|A2|G|1756
6GZX|1|A2|C|1757
6GZX|1|A2|U|1758
*
6GZX|1|A2|A|1782
6GZX|1|A2|G|1783
6GZX|1|A2|C|1784
6GZX|1|A2|C|1785
*
6GZX|1|A2|G|1789
6GZX|1|A2|U|1790
6GZX|1|A2|G|1791
6GZX|1|A2|A|1792
6GZX|1|A2|A|1793
6GZX|1|A2|C|1794
6GZX|1|A2|A|1795
6GZX|1|A2|G|1796
6GZX|1|A2|G|1797
*
6GZX|1|A2|C|2012
6GZX|1|A2|G|2013
6GZX|1|A2|C|2014

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain D2

50S ribosomal protein L3

Chain J2

50S ribosomal protein L14

Chain O2

50S ribosomal protein L19