J5_6GZX_012

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAAGU*GCGGACGGG*CAGGG*CCCACU*AGGCAG

Length

31 nucleotides

Bulged bases

6GZX|1|A3|A|60, 6GZX|1|A3|C|347, 6GZX|1|A3|A|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A3|C|58
6GZX|1|A3|A|59
6GZX|1|A3|A|60
6GZX|1|A3|G|61
6GZX|1|A3|U|62
*
6GZX|1|A3|G|98
6GZX|1|A3|C|99
6GZX|1|A3|G|100
6GZX|1|A3|G|101
6GZX|1|A3|A|102
6GZX|1|A3|C|103
6GZX|1|A3|G|104
6GZX|1|A3|G|105
6GZX|1|A3|G|106
*
6GZX|1|A3|C|309
6GZX|1|A3|A|310
6GZX|1|A3|G|311
6GZX|1|A3|G|312
6GZX|1|A3|G|313
*
6GZX|1|A3|C|330
6GZX|1|A3|C|331
6GZX|1|A3|C|332
6GZX|1|A3|A|333
6GZX|1|A3|C|334
6GZX|1|A3|U|335
*
6GZX|1|A3|A|344
6GZX|1|A3|G|345
6GZX|1|A3|G|346
6GZX|1|A3|C|347
6GZX|1|A3|A|348
6GZX|1|A3|G|349

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain J1

50S ribosomal protein L14

Chain O1

50S ribosomal protein L19

Chain P3

30S ribosomal protein S16

Chain T3

30S ribosomal protein S20