J5_6GZX_015

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUGGCGGC*GCCGCUUGG*CCUGAACCC*GGGGUAAUAG*CGAG

Length

40 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|C|36
6GZX|1|A4|U|37
6GZX|1|A4|G|38
6GZX|1|A4|G|39
6GZX|1|A4|C|40
6GZX|1|A4|G|41
6GZX|1|A4|G|42
6GZX|1|A4|C|43
*
6GZX|1|A4|G|394
6GZX|1|A4|C|395
6GZX|1|A4|C|396
6GZX|1|A4|G|397
6GZX|1|A4|C|398
6GZX|1|A4|U|399
6GZX|1|A4|U|400
6GZX|1|A4|G|401
6GZX|1|A4|G|402
*
6GZX|1|A4|C|430
6GZX|1|A4|C|431
6GZX|1|A4|U|432
6GZX|1|A4|G|433
6GZX|1|A4|A|434
6GZX|1|A4|A|435
6GZX|1|A4|C|436
6GZX|1|A4|C|437
6GZX|1|A4|C|438
*
6GZX|1|A4|G|474
6GZX|1|A4|G|475
6GZX|1|A4|G|476
6GZX|1|A4|G|477
6GZX|1|A4|U|478
6GZX|1|A4|A|479
6GZX|1|A4|A|480
6GZX|1|A4|U|481
6GZX|1|A4|A|482
6GZX|1|A4|G|483
*
6GZX|1|A4|C|528
6GZX|1|A4|G|529
6GZX|1|A4|A|530
6GZX|1|A4|G|531

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4

Chain L4

30S ribosomal protein S12

Chain P4

30S ribosomal protein S16