J5_6GZX_016
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- CGACUC*GGAC*GUUCUC*GAGCGUUCC*GAAGUGCGAAUG
- Length
- 37 nucleotides
- Bulged bases
- 6GZX|1|A1|C|861, 6GZX|1|A1|G|1296, 6GZX|1|A1|G|1300, 6GZX|1|A1|A|1301, 6GZX|1|A1|U|1303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A1|C|609
6GZX|1|A1|G|610
6GZX|1|A1|A|611
6GZX|1|A1|C|612
6GZX|1|A1|U|613
6GZX|1|A1|C|614
*
6GZX|1|A1|G|717
6GZX|1|A1|G|718
6GZX|1|A1|A|719
6GZX|1|A1|C|720
*
6GZX|1|A1|G|858
6GZX|1|A1|U|859
6GZX|1|A1|U|860
6GZX|1|A1|C|861
6GZX|1|A1|U|862
6GZX|1|A1|C|863
*
6GZX|1|A1|G|1240
6GZX|1|A1|A|1241
6GZX|1|A1|G|1242
6GZX|1|A1|C|1243
6GZX|1|A1|G|1244
6GZX|1|A1|U|1245
6GZX|1|A1|U|1246
6GZX|1|A1|C|1247
6GZX|1|A1|C|1248
*
6GZX|1|A1|G|1293
6GZX|1|A1|A|1294
6GZX|1|A1|A|1295
6GZX|1|A1|G|1296
6GZX|1|A1|U|1297
6GZX|1|A1|G|1298
6GZX|1|A1|C|1299
6GZX|1|A1|G|1300
6GZX|1|A1|A|1301
6GZX|1|A1|A|1302
6GZX|1|A1|U|1303
6GZX|1|A1|G|1304
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain E1
- 50S ribosomal protein L4
- Chain K1
- 50S ribosomal protein L15
- Chain P1
- 50S ribosomal protein L20
- Chain Q1
- 50S ribosomal protein L21
- Chain d1
- 50S ribosomal protein L35
Coloring options: