J5_6GZX_017
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- GACGAAAAGACCC*GGGAUAACAGGCUGA*UGGCACCUCGAUGUC*GGUUCAG*CGGUCUCUAUC
- Length
- 61 nucleotides
- Bulged bases
- 6GZX|1|A1|C|2079, 6GZX|1|A1|G|2080, 6GZX|1|A1|A|2462, 6GZX|1|A1|A|2511, 6GZX|1|A1|C|2515, 6GZX|1|A1|G|2519, 6GZX|1|A1|U|2623, 6GZX|1|A1|C|2624, 6GZX|1|A1|U|2625, 6GZX|1|A1|C|2626, 6GZX|1|A1|U|2627, 6GZX|1|A1|U|2629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A1|G|2077
6GZX|1|A1|A|2078
6GZX|1|A1|C|2079
6GZX|1|A1|G|2080
6GZX|1|A1|A|2081
6GZX|1|A1|A|2082
6GZX|1|A1|A|2083
6GZX|1|A1|A|2084
6GZX|1|A1|G|2085
6GZX|1|A1|A|2086
6GZX|1|A1|C|2087
6GZX|1|A1|C|2088
6GZX|1|A1|C|2089
*
6GZX|1|A1|G|2459
6GZX|1|A1|G|2460
6GZX|1|A1|G|2461
6GZX|1|A1|A|2462
6GZX|1|A1|U|2463
6GZX|1|A1|A|2464
6GZX|1|A1|A|2465
6GZX|1|A1|C|2466
6GZX|1|A1|A|2467
6GZX|1|A1|G|2468
6GZX|1|A1|G|2469
6GZX|1|A1|C|2470
6GZX|1|A1|U|2471
6GZX|1|A1|G|2472
6GZX|1|A1|A|2473
*
6GZX|1|A1|U|2507
6GZX|1|A1|G|2508
6GZX|1|A1|G|2509
6GZX|1|A1|C|2510
6GZX|1|A1|A|2511
6GZX|1|A1|C|2512
6GZX|1|A1|C|2513
6GZX|1|A1|U|2514
6GZX|1|A1|C|2515
6GZX|1|A1|G|2516
6GZX|1|A1|A|2517
6GZX|1|A1|U|2518
6GZX|1|A1|G|2519
6GZX|1|A1|U|2520
6GZX|1|A1|C|2521
*
6GZX|1|A1|G|2596
6GZX|1|A1|G|2597
6GZX|1|A1|U|2598
6GZX|1|A1|U|2599
6GZX|1|A1|C|2600
6GZX|1|A1|A|2601
6GZX|1|A1|G|2602
*
6GZX|1|A1|C|2620
6GZX|1|A1|G|2621
6GZX|1|A1|G|2622
6GZX|1|A1|U|2623
6GZX|1|A1|C|2624
6GZX|1|A1|U|2625
6GZX|1|A1|C|2626
6GZX|1|A1|U|2627
6GZX|1|A1|A|2628
6GZX|1|A1|U|2629
6GZX|1|A1|C|2630
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain C1
- 50S ribosomal protein L2
- Chain D1
- 50S ribosomal protein L3
- Chain E1
- 50S ribosomal protein L4
- Chain L1
- 50S ribosomal protein L16
- Chain R1
- 50S ribosomal protein L22
- Chain a1
- 50S ribosomal protein L32
Coloring options: