J5_6GZX_023
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- CGAUGCG*CGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGC*GCCUUGUACACAC*GGUA*UG
- Length
- 80 nucleotides
- Bulged bases
- 6GZX|1|A3|A|1376, 6GZX|1|A3|C|1379, 6GZX|1|A3|A|1380, 6GZX|1|A3|U|1483
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|A3|C|800
6GZX|1|A3|G|801
6GZX|1|A3|A|802
6GZX|1|A3|U|803
6GZX|1|A3|G|804
6GZX|1|A3|C|805
6GZX|1|A3|G|806
*
6GZX|1|A3|C|854
6GZX|1|A3|G|855
6GZX|1|A3|C|856
6GZX|1|A3|C|857
6GZX|1|A3|G|858
6GZX|1|A3|C|859
6GZX|1|A3|C|860
6GZX|1|A3|U|861
6GZX|1|A3|G|862
6GZX|1|A3|G|863
6GZX|1|A3|G|864
6GZX|1|A3|G|865
6GZX|1|A3|A|866
6GZX|1|A3|G|867
6GZX|1|A3|U|868
6GZX|1|A3|A|869
6GZX|1|A3|C|870
6GZX|1|A3|G|871
6GZX|1|A3|G|872
6GZX|1|A3|C|873
6GZX|1|A3|C|874
6GZX|1|A3|G|875
6GZX|1|A3|C|876
6GZX|1|A3|A|877
6GZX|1|A3|A|878
6GZX|1|A3|G|879
6GZX|1|A3|G|880
6GZX|1|A3|C|881
6GZX|1|A3|U|882
6GZX|1|A3|G|883
6GZX|1|A3|A|884
6GZX|1|A3|A|885
6GZX|1|A3|A|886
6GZX|1|A3|C|887
6GZX|1|A3|U|888
6GZX|1|A3|C|889
6GZX|1|A3|A|890
6GZX|1|A3|A|891
6GZX|1|A3|A|892
6GZX|1|A3|G|893
6GZX|1|A3|G|894
6GZX|1|A3|A|895
6GZX|1|A3|A|896
6GZX|1|A3|U|897
6GZX|1|A3|U|898
6GZX|1|A3|G|899
6GZX|1|A3|A|900
6GZX|1|A3|C|901
6GZX|1|A3|G|902
6GZX|1|A3|G|903
6GZX|1|A3|G|904
6GZX|1|A3|G|905
6GZX|1|A3|G|906
6GZX|1|A3|C|907
*
6GZX|1|A3|G|1369
6GZX|1|A3|C|1370
6GZX|1|A3|C|1371
6GZX|1|A3|U|1372
6GZX|1|A3|U|1373
6GZX|1|A3|G|1374
6GZX|1|A3|U|1375
6GZX|1|A3|A|1376
6GZX|1|A3|C|1377
6GZX|1|A3|A|1378
6GZX|1|A3|C|1379
6GZX|1|A3|A|1380
6GZX|1|A3|C|1381
*
6GZX|1|A3|G|1481
6GZX|1|A3|G|1482
6GZX|1|A3|U|1483
6GZX|1|A3|A|1484
*
6GZX|1|A3|U|1505
6GZX|1|A3|G|1506
Current chains
- Chain A3
- 16S ribosomal RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E3
- 30S ribosomal protein S5
- Chain G3
- 30S ribosomal protein S7
- Chain H3
- 30S ribosomal protein S8
- Chain K3
- 30S ribosomal protein S11
- Chain L3
- 30S ribosomal protein S12
- Chain Q3
- 30S ribosomal protein S17
- Chain V3
- Ribosome hibernation promoting factor
Coloring options: