Loop J5_6GZZ

3D structure

PDB id: 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: T. thermophilus hibernating 100S ribosome (amc)
Experimental method: ELECTRON MICROSCOPY
Resolution: 4.13 Å

Loop

Sequence: CAAGGAACUCUGCAAGUUGGC*GUGCU*AGCC*GUGAACAGG*CGCUGUCUCG
Length: 49 nucleotides
Bulged bases: 6GZZ|1|A1|G|1791, 6GZZ|1|A1|G|1796
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6GZZ|1|A1|C|1712
6GZZ|1|A1|A|1713
6GZZ|1|A1|A|1714
6GZZ|1|A1|G|1715
6GZZ|1|A1|G|1716
6GZZ|1|A1|A|1717
6GZZ|1|A1|A|1718
6GZZ|1|A1|C|1719
6GZZ|1|A1|U|1720
6GZZ|1|A1|C|1721
6GZZ|1|A1|U|1722
6GZZ|1|A1|G|1723
6GZZ|1|A1|C|1724
6GZZ|1|A1|A|1725
6GZZ|1|A1|A|1726
6GZZ|1|A1|G|1727
6GZZ|1|A1|U|1728
6GZZ|1|A1|U|1729
6GZZ|1|A1|G|1730
6GZZ|1|A1|G|1731
6GZZ|1|A1|C|1732
*
6GZZ|1|A1|G|1754
6GZZ|1|A1|U|1755
6GZZ|1|A1|G|1756
6GZZ|1|A1|C|1757
6GZZ|1|A1|U|1758
*
6GZZ|1|A1|A|1782
6GZZ|1|A1|G|1783
6GZZ|1|A1|C|1784
6GZZ|1|A1|C|1785
*
6GZZ|1|A1|G|1789
6GZZ|1|A1|U|1790
6GZZ|1|A1|G|1791
6GZZ|1|A1|A|1792
6GZZ|1|A1|A|1793
6GZZ|1|A1|C|1794
6GZZ|1|A1|A|1795
6GZZ|1|A1|G|1796
6GZZ|1|A1|G|1797
*
6GZZ|1|A1|C|2012
6GZZ|1|A1|G|2013
6GZZ|1|A1|C|2014
6GZZ|1|A1|U|2015
6GZZ|1|A1|G|2016
6GZZ|1|A1|U|2017
6GZZ|1|A1|C|2018
6GZZ|1|A1|U|2019
6GZZ|1|A1|C|2020
6GZZ|1|A1|G|2021

Current chains

Chain A1: 23S ribosomal RNA

Nearby chains

Chain A3: Small subunit ribosomal RNA; SSU rRNA
Chain D1: 50S ribosomal protein L3
Chain J1: 50S ribosomal protein L14
Chain O1: 50S ribosomal protein L19

J5_6GZZ_001