J5_6GZZ_004
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- CAGGACGAAAAGACCCC*GGGGAUAACAGGC*GCACCUCGAUGUCGGCUCG*CACGCGAGCUGGGUUCAG*CGGUCUCUAUCCG
- Length
- 80 nucleotides
- Bulged bases
- 6GZZ|1|A2|A|2462, 6GZZ|1|A2|U|2463, 6GZZ|1|A2|A|2511, 6GZZ|1|A2|A|2586, 6GZZ|1|A2|C|2587, 6GZZ|1|A2|U|2599, 6GZZ|1|A2|U|2623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZZ|1|A2|C|2074
6GZZ|1|A2|A|2075
6GZZ|1|A2|G|2076
6GZZ|1|A2|G|2077
6GZZ|1|A2|A|2078
6GZZ|1|A2|C|2079
6GZZ|1|A2|G|2080
6GZZ|1|A2|A|2081
6GZZ|1|A2|A|2082
6GZZ|1|A2|A|2083
6GZZ|1|A2|A|2084
6GZZ|1|A2|G|2085
6GZZ|1|A2|A|2086
6GZZ|1|A2|C|2087
6GZZ|1|A2|C|2088
6GZZ|1|A2|C|2089
6GZZ|1|A2|C|2090
*
6GZZ|1|A2|G|2458
6GZZ|1|A2|G|2459
6GZZ|1|A2|G|2460
6GZZ|1|A2|G|2461
6GZZ|1|A2|A|2462
6GZZ|1|A2|U|2463
6GZZ|1|A2|A|2464
6GZZ|1|A2|A|2465
6GZZ|1|A2|C|2466
6GZZ|1|A2|A|2467
6GZZ|1|A2|G|2468
6GZZ|1|A2|G|2469
6GZZ|1|A2|C|2470
*
6GZZ|1|A2|G|2509
6GZZ|1|A2|C|2510
6GZZ|1|A2|A|2511
6GZZ|1|A2|C|2512
6GZZ|1|A2|C|2513
6GZZ|1|A2|U|2514
6GZZ|1|A2|C|2515
6GZZ|1|A2|G|2516
6GZZ|1|A2|A|2517
6GZZ|1|A2|U|2518
6GZZ|1|A2|G|2519
6GZZ|1|A2|U|2520
6GZZ|1|A2|C|2521
6GZZ|1|A2|G|2522
6GZZ|1|A2|G|2523
6GZZ|1|A2|C|2524
6GZZ|1|A2|U|2525
6GZZ|1|A2|C|2526
6GZZ|1|A2|G|2527
*
6GZZ|1|A2|C|2585
6GZZ|1|A2|A|2586
6GZZ|1|A2|C|2587
6GZZ|1|A2|G|2588
6GZZ|1|A2|C|2589
6GZZ|1|A2|G|2590
6GZZ|1|A2|A|2591
6GZZ|1|A2|G|2592
6GZZ|1|A2|C|2593
6GZZ|1|A2|U|2594
6GZZ|1|A2|G|2595
6GZZ|1|A2|G|2596
6GZZ|1|A2|G|2597
6GZZ|1|A2|U|2598
6GZZ|1|A2|U|2599
6GZZ|1|A2|C|2600
6GZZ|1|A2|A|2601
6GZZ|1|A2|G|2602
*
6GZZ|1|A2|C|2620
6GZZ|1|A2|G|2621
6GZZ|1|A2|G|2622
6GZZ|1|A2|U|2623
6GZZ|1|A2|C|2624
6GZZ|1|A2|U|2625
6GZZ|1|A2|C|2626
6GZZ|1|A2|U|2627
6GZZ|1|A2|A|2628
6GZZ|1|A2|U|2629
6GZZ|1|A2|C|2630
6GZZ|1|A2|C|2631
6GZZ|1|A2|G|2632
Current chains
- Chain A2
- 23S ribosomal RNA
Nearby chains
- Chain C2
- 50S ribosomal protein L2
- Chain D2
- 50S ribosomal protein L3
- Chain E2
- 50S ribosomal protein L4
- Chain I2
- 50S ribosomal protein L13
- Chain L2
- 50S ribosomal protein L16
- Chain R2
- 50S ribosomal protein L22
- Chain a2
- 50S ribosomal protein L32
Coloring options: