J5_6GZZ_005

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUGG*CUUGGAG*CUCCUGAACC*GGGUAAUAG*CGAG

Length

34 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A3|C|36
6GZZ|1|A3|U|37
6GZZ|1|A3|G|38
6GZZ|1|A3|G|39
*
6GZZ|1|A3|C|398
6GZZ|1|A3|U|399
6GZZ|1|A3|U|400
6GZZ|1|A3|G|401
6GZZ|1|A3|G|402
6GZZ|1|A3|A|403
6GZZ|1|A3|G|404
*
6GZZ|1|A3|C|428
6GZZ|1|A3|U|429
6GZZ|1|A3|C|430
6GZZ|1|A3|C|431
6GZZ|1|A3|U|432
6GZZ|1|A3|G|433
6GZZ|1|A3|A|434
6GZZ|1|A3|A|435
6GZZ|1|A3|C|436
6GZZ|1|A3|C|437
*
6GZZ|1|A3|G|475
6GZZ|1|A3|G|476
6GZZ|1|A3|G|477
6GZZ|1|A3|U|478
6GZZ|1|A3|A|479
6GZZ|1|A3|A|480
6GZZ|1|A3|U|481
6GZZ|1|A3|A|482
6GZZ|1|A3|G|483
*
6GZZ|1|A3|C|528
6GZZ|1|A3|G|529
6GZZ|1|A3|A|530
6GZZ|1|A3|G|531

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain D3

30S ribosomal protein S4

Chain L3

30S ribosomal protein S12