J5_6GZZ_006
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6GZZ_006 not in the Motif Atlas
- Homologous match to J5_6CZR_007
- Geometric discrepancy: 0.2569
- The information below is about J5_6CZR_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZZ|1|A4|C|36
6GZZ|1|A4|U|37
6GZZ|1|A4|G|38
6GZZ|1|A4|G|39
*
6GZZ|1|A4|C|398
6GZZ|1|A4|U|399
6GZZ|1|A4|U|400
6GZZ|1|A4|G|401
*
6GZZ|1|A4|C|431
6GZZ|1|A4|U|432
6GZZ|1|A4|G|433
6GZZ|1|A4|A|434
6GZZ|1|A4|A|435
6GZZ|1|A4|C|436
6GZZ|1|A4|C|437
*
6GZZ|1|A4|G|475
6GZZ|1|A4|G|476
6GZZ|1|A4|G|477
6GZZ|1|A4|U|478
6GZZ|1|A4|A|479
6GZZ|1|A4|A|480
6GZZ|1|A4|U|481
6GZZ|1|A4|A|482
6GZZ|1|A4|G|483
*
6GZZ|1|A4|C|528
6GZZ|1|A4|G|529
6GZZ|1|A4|A|530
6GZZ|1|A4|G|531
Current chains
- Chain A4
- 16S ribosomal RNA
Nearby chains
- Chain D4
- 30S ribosomal protein S4
- Chain L4
- 30S ribosomal protein S12
Coloring options: