J5_6GZZ_007

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCUAAGACAUGCAAG*CGGACGGGUG*CACAG*CAC*GGCAGCAGUUAG

Length

45 nucleotides

Bulged bases

6GZZ|1|A4|C|48, 6GZZ|1|A4|A|50, 6GZZ|1|A4|G|101, 6GZZ|1|A4|A|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|C|47
6GZZ|1|A4|C|48
6GZZ|1|A4|U|49
6GZZ|1|A4|A|50
6GZZ|1|A4|A|51
6GZZ|1|A4|G|52
6GZZ|1|A4|A|53
6GZZ|1|A4|C|54
6GZZ|1|A4|A|55
6GZZ|1|A4|U|56
6GZZ|1|A4|G|57
6GZZ|1|A4|C|58
6GZZ|1|A4|A|59
6GZZ|1|A4|A|60
6GZZ|1|A4|G|61
*
6GZZ|1|A4|C|99
6GZZ|1|A4|G|100
6GZZ|1|A4|G|101
6GZZ|1|A4|A|102
6GZZ|1|A4|C|103
6GZZ|1|A4|G|104
6GZZ|1|A4|G|105
6GZZ|1|A4|G|106
6GZZ|1|A4|U|107
6GZZ|1|A4|G|108
*
6GZZ|1|A4|C|307
6GZZ|1|A4|A|308
6GZZ|1|A4|C|309
6GZZ|1|A4|A|310
6GZZ|1|A4|G|311
*
6GZZ|1|A4|C|332
6GZZ|1|A4|A|333
6GZZ|1|A4|C|334
*
6GZZ|1|A4|G|345
6GZZ|1|A4|G|346
6GZZ|1|A4|C|347
6GZZ|1|A4|A|348
6GZZ|1|A4|G|349
6GZZ|1|A4|C|350
6GZZ|1|A4|A|351
6GZZ|1|A4|G|352
6GZZ|1|A4|U|353
6GZZ|1|A4|U|354
6GZZ|1|A4|A|355
6GZZ|1|A4|G|356

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain J2

50S ribosomal protein L14

Chain L4

30S ribosomal protein S12

Chain P4

30S ribosomal protein S16

Chain T4

30S ribosomal protein S20