3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAG*CGUAC*GGG*CA*UG
Length
15 nucleotides
Bulged bases
6H4N|1|A|A|532, 6H4N|1|A|U|562
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6H4N_002 not in the Motif Atlas
Homologous match to J5_5J7L_014
Geometric discrepancy: 0.0659
The information below is about J5_5J7L_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_43153.5
Basepair signature
cWW-cWW-cWW-F-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6H4N|1|A|C|531
6H4N|1|A|A|532
6H4N|1|A|G|533
*
6H4N|1|A|C|560
6H4N|1|A|G|561
6H4N|1|A|U|562
6H4N|1|A|A|563
6H4N|1|A|C|564
*
6H4N|1|A|G|577
6H4N|1|A|G|578
6H4N|1|A|G|579
*
6H4N|1|A|C|1261
6H4N|1|A|A|1262
*
6H4N|1|A|U|2017
6H4N|1|A|G|2018

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain E
50S ribosomal protein L4
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain S
50S ribosomal protein L22

Coloring options:


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