J5_6HA1_001

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

6HA1|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6HA1_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0942

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6HA1|1|A|C|47
6HA1|1|A|G|48
6HA1|1|A|A|49
6HA1|1|A|U|50
6HA1|1|A|G|51
6HA1|1|A|A|52
6HA1|1|A|A|53
6HA1|1|A|G|54
*
6HA1|1|A|C|115
6HA1|1|A|G|116
6HA1|1|A|A|117
6HA1|1|A|A|118
6HA1|1|A|U|119
6HA1|1|A|G|120
*
6HA1|1|A|C|129
6HA1|1|A|A|130
*
6HA1|1|A|U|149
6HA1|1|A|A|150
6HA1|1|A|U|151
*
6HA1|1|A|A|178
6HA1|1|A|A|179
6HA1|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23