J5_6HA1_008

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUG*CUGUUG*CCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HA1|1|a|C|38
6HA1|1|a|U|39
6HA1|1|a|G|40
6HA1|1|a|G|41
*
6HA1|1|a|C|411
6HA1|1|a|G|412
6HA1|1|a|U|413
6HA1|1|a|G|414
*
6HA1|1|a|C|444
6HA1|1|a|U|445
6HA1|1|a|G|446
6HA1|1|a|U|447
6HA1|1|a|U|448
6HA1|1|a|G|449
*
6HA1|1|a|C|502
6HA1|1|a|C|503
6HA1|1|a|A|504
6HA1|1|a|G|505
6HA1|1|a|A|506
6HA1|1|a|A|507
6HA1|1|a|A|508
6HA1|1|a|G|509
*
6HA1|1|a|C|554
6HA1|1|a|A|555
6HA1|1|a|A|556
6HA1|1|a|G|557

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain l

30S ribosomal protein S12