J5_6HA1_010
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGG*CGC*GUG*CUUA*UC
- Length
- 16 nucleotides
- Bulged bases
- 6HA1|1|x|U|8, 6HA1|1|x|G|9, 6HA1|1|x|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HA1_010 not in the Motif Atlas
- Homologous match to J5_3ZGZ_001
- Geometric discrepancy: 0.2798
- The information below is about J5_3ZGZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_97113.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HA1|1|x|G|7
6HA1|1|x|U|8
6HA1|1|x|G|9
6HA1|1|x|G|10
*
6HA1|1|x|C|26
6HA1|1|x|G|27
6HA1|1|x|C|28
*
6HA1|1|x|G|44
6HA1|1|x|U|45
6HA1|1|x|G|46
*
6HA1|1|x|C|57
6HA1|1|x|U|58
6HA1|1|x|U|59
6HA1|1|x|A|60
*
6HA1|1|x|U|76
6HA1|1|x|C|77
Current chains
- Chain x
- P-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: