J5_6HCF_001
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGGAGUC*GGACC*GGUUCC*GGCCGCUGCGGUGAGCCUUGAAG*UGGAGCCGCCGCAGGUGCAGAUCU
- Length
- 65 nucleotides
- Bulged bases
- 6HCF|1|52|C|2289, 6HCF|1|52|A|2300, 6HCF|1|52|U|2305, 6HCF|1|52|G|2343, 6HCF|1|52|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|A|1334
6HCF|1|52|G|1335
6HCF|1|52|G|1336
6HCF|1|52|A|1337
6HCF|1|52|G|1338
6HCF|1|52|U|1339
6HCF|1|52|C|1340
*
6HCF|1|52|G|1516
6HCF|1|52|G|1517
6HCF|1|52|A|1518
6HCF|1|52|C|1519
6HCF|1|52|C|1520
*
6HCF|1|52|G|1657
6HCF|1|52|G|1658
6HCF|1|52|U|1659
6HCF|1|52|U|1660
6HCF|1|52|C|1661
6HCF|1|52|C|1662
*
6HCF|1|52|G|2287
6HCF|1|52|G|2288
6HCF|1|52|C|2289
6HCF|1|52|C|2290
6HCF|1|52|G|2291
6HCF|1|52|C|2292
6HCF|1|52|U|2293
6HCF|1|52|G|2294
6HCF|1|52|C|2295
6HCF|1|52|G|2296
6HCF|1|52|G|2297
6HCF|1|52|U|2298
6HCF|1|52|G|2299
6HCF|1|52|A|2300
6HCF|1|52|G|2301
6HCF|1|52|C|2302
6HCF|1|52|C|2303
6HCF|1|52|U|2304
6HCF|1|52|U|2305
6HCF|1|52|G|2306
6HCF|1|52|A|2307
6HCF|1|52|A|2308
6HCF|1|52|G|2309
*
6HCF|1|52|U|2329
6HCF|1|52|G|2330
6HCF|1|52|G|2331
6HCF|1|52|A|2332
6HCF|1|52|G|2333
6HCF|1|52|C|2334
6HCF|1|52|C|2335
6HCF|1|52|G|2336
6HCF|1|52|C|2337
6HCF|1|52|C|2338
6HCF|1|52|G|2339
6HCF|1|52|C|2340
6HCF|1|52|A|2341
6HCF|1|52|G|2342
6HCF|1|52|G|2343
6HCF|1|52|U|2344
6HCF|1|52|G|2345
6HCF|1|52|C|2346
6HCF|1|52|A|2347
6HCF|1|52|G|2348
6HCF|1|52|A|2349
6HCF|1|52|U|2350
6HCF|1|52|C|2351
6HCF|1|52|U|2352
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C3
- uL4
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain Y3
- Ribosomal protein L26
- Chain a3
- uL15
- Chain e3
- eL32
- Chain r3
- eL28
Coloring options: