Loop J5_6HCF

3D structure

PDB id: 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: CAAAUAUUC*GAAGGCCGAAGUGG*CCAAG*CUCUGGCAUGUUGG*CCAG
Length: 46 nucleotides
Bulged bases: 6HCF|1|52|A|2366, 6HCF|1|52|U|2369, 6HCF|1|52|A|2370, 6HCF|1|52|A|2396, 6HCF|1|52|A|2806, 6HCF|1|52|U|2828
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6HCF|1|52|C|2365
6HCF|1|52|A|2366
6HCF|1|52|A|2367
6HCF|1|52|A|2368
6HCF|1|52|U|2369
6HCF|1|52|A|2370
6HCF|1|52|U|2371
6HCF|1|52|U|2372
6HCF|1|52|C|2373
*
6HCF|1|52|G|2387
6HCF|1|52|A|2388
6HCF|1|52|A|2389
6HCF|1|52|G|2390
6HCF|1|52|G|2391
6HCF|1|52|C|2392
6HCF|1|52|C|2393
6HCF|1|52|G|2394
6HCF|1|52|A|2395
6HCF|1|52|A|2396
6HCF|1|52|G|2397
6HCF|1|52|U|2398
6HCF|1|52|G|2399
6HCF|1|52|G|2400
*
6HCF|1|52|C|2804
6HCF|1|52|C|2805
6HCF|1|52|A|2806
6HCF|1|52|A|2807
6HCF|1|52|G|2808
*
6HCF|1|52|C|2818
6HCF|1|52|U|2819
6HCF|1|52|C|2820
6HCF|1|52|U|2821
6HCF|1|52|G|2822
6HCF|1|52|G|2823
6HCF|1|52|C|2824
6HCF|1|52|A|2825
6HCF|1|52|U|2826
6HCF|1|52|G|2827
6HCF|1|52|U|2828
6HCF|1|52|U|2829
6HCF|1|52|G|2830
6HCF|1|52|G|2831
*
6HCF|1|52|C|3854
6HCF|1|52|C|3855
6HCF|1|52|A|3856
6HCF|1|52|G|3857

Current chains

Chain 52: 28S ribosomal RNA

Nearby chains

Chain P3: uL22
Chain R3: eL19
Chain d3: eL31
Chain g3: eL34

J5_6HCF_002