J5_6HCF_005
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUCGCUCG*CGGG*UGCAUUU*ACCUCGGGCCG*CGACC
- Length
- 35 nucleotides
- Bulged bases
- 6HCF|1|A1|G|126, 6HCF|1|A1|C|127, 6HCF|1|A1|U|305, 6HCF|1|A1|G|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|G|123
6HCF|1|A1|U|124
6HCF|1|A1|C|125
6HCF|1|A1|G|126
6HCF|1|A1|C|127
6HCF|1|A1|U|128
6HCF|1|A1|C|129
6HCF|1|A1|G|130
*
6HCF|1|A1|C|182
6HCF|1|A1|G|183
6HCF|1|A1|G|184
6HCF|1|A1|G|185
*
6HCF|1|A1|U|214
6HCF|1|A1|G|215
6HCF|1|A1|C|216
6HCF|1|A1|A|217
6HCF|1|A1|U|218
6HCF|1|A1|U|219
6HCF|1|A1|U|220
*
6HCF|1|A1|A|302
6HCF|1|A1|C|303
6HCF|1|A1|C|304
6HCF|1|A1|U|305
6HCF|1|A1|C|306
6HCF|1|A1|G|307
6HCF|1|A1|G|308
6HCF|1|A1|G|309
6HCF|1|A1|C|310
6HCF|1|A1|C|311
6HCF|1|A1|G|312
*
6HCF|1|A1|C|337
6HCF|1|A1|G|338
6HCF|1|A1|A|339
6HCF|1|A1|C|340
6HCF|1|A1|C|341
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- eS4
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- eS8
Coloring options: