J5_6HCF_008
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUGGCUUGUGG*CUUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 58 nucleotides
- Bulged bases
- 6HCF|1|52|A|3908, 6HCF|1|52|A|4394, 6HCF|1|52|U|4437, 6HCF|1|52|G|4451, 6HCF|1|52|U|4452, 6HCF|1|52|U|4531, 6HCF|1|52|U|4555, 6HCF|1|52|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|52|A|3903
6HCF|1|52|G|3904
6HCF|1|52|A|3905
6HCF|1|52|A|3906
6HCF|1|52|G|3907
6HCF|1|52|A|3908
6HCF|1|52|C|3909
6HCF|1|52|C|3910
*
6HCF|1|52|G|4392
6HCF|1|52|G|4393
6HCF|1|52|A|4394
6HCF|1|52|U|4395
6HCF|1|52|A|4396
6HCF|1|52|A|4397
6HCF|1|52|C|4398
6HCF|1|52|U|4399
6HCF|1|52|G|4400
6HCF|1|52|G|4401
6HCF|1|52|C|4402
6HCF|1|52|U|4403
6HCF|1|52|U|4404
6HCF|1|52|G|4405
6HCF|1|52|U|4406
6HCF|1|52|G|4407
6HCF|1|52|G|4408
*
6HCF|1|52|C|4434
6HCF|1|52|U|4435
6HCF|1|52|U|4436
6HCF|1|52|U|4437
6HCF|1|52|U|4438
6HCF|1|52|U|4439
6HCF|1|52|G|4440
6HCF|1|52|A|4441
6HCF|1|52|U|4442
6HCF|1|52|C|4443
6HCF|1|52|C|4444
6HCF|1|52|U|4445
6HCF|1|52|U|4446
6HCF|1|52|C|4447
6HCF|1|52|G|4448
6HCF|1|52|A|4449
6HCF|1|52|U|4450
6HCF|1|52|G|4451
6HCF|1|52|U|4452
6HCF|1|52|C|4453
*
6HCF|1|52|G|4528
6HCF|1|52|G|4529
6HCF|1|52|U|4530
6HCF|1|52|U|4531
6HCF|1|52|U|4532
6HCF|1|52|A|4533
6HCF|1|52|G|4534
*
6HCF|1|52|U|4552
6HCF|1|52|A|4553
6HCF|1|52|G|4554
6HCF|1|52|U|4555
6HCF|1|52|U|4556
6HCF|1|52|U|4557
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 23
- Transfer RNA; tRNA
- Chain A3
- Ribosomal protein L8
- Chain B3
- uL3
- Chain C3
- uL4
- Chain I3
- 60S ribosomal protein L10
- Chain b3
- eL29
- Chain j1
- eRF1(AAQ)
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