J5_6HCF_009
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGUCU*AAAAAUAAC*GAAUGAG*CGAGGAUCCAU*AUAG
- Length
- 38 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|C|30
6HCF|1|A1|U|31
6HCF|1|A1|U|32
6HCF|1|A1|G|33
6HCF|1|A1|U|34
6HCF|1|A1|C|35
6HCF|1|A1|U|36
*
6HCF|1|A1|A|519
6HCF|1|A1|A|520
6HCF|1|A1|A|521
6HCF|1|A1|A|522
6HCF|1|A1|A|523
6HCF|1|A1|U|524
6HCF|1|A1|A|525
6HCF|1|A1|A|526
6HCF|1|A1|C|527
*
6HCF|1|A1|G|559
6HCF|1|A1|A|560
6HCF|1|A1|A|561
6HCF|1|A1|U|562
6HCF|1|A1|G|563
6HCF|1|A1|A|564
6HCF|1|A1|G|565
*
6HCF|1|A1|C|585
6HCF|1|A1|G|586
6HCF|1|A1|A|587
6HCF|1|A1|G|588
6HCF|1|A1|G|589
6HCF|1|A1|A|590
6HCF|1|A1|U|591
6HCF|1|A1|C|592
6HCF|1|A1|C|593
6HCF|1|A1|A|594
6HCF|1|A1|U|595
*
6HCF|1|A1|A|641
6HCF|1|A1|U|642
6HCF|1|A1|A|643
6HCF|1|A1|G|644
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain Y1
- uS12
- Chain f1
- 40S ribosomal protein S30
Coloring options: