J5_6HCJ_001
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAGGAGUC*GGACCCG*CUGGUUCCCUC*GAGGGCCGCUG*CAGGUGCAGAUCUUG
- Length
- 53 nucleotides
- Bulged bases
- 6HCJ|1|51|C|2289, 6HCJ|1|51|G|2343, 6HCJ|1|51|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCJ|1|51|C|1332
6HCJ|1|51|A|1333
6HCJ|1|51|A|1334
6HCJ|1|51|G|1335
6HCJ|1|51|G|1336
6HCJ|1|51|A|1337
6HCJ|1|51|G|1338
6HCJ|1|51|U|1339
6HCJ|1|51|C|1340
*
6HCJ|1|51|G|1516
6HCJ|1|51|G|1517
6HCJ|1|51|A|1518
6HCJ|1|51|C|1519
6HCJ|1|51|C|1520
6HCJ|1|51|C|1521
6HCJ|1|51|G|1522
*
6HCJ|1|51|C|1655
6HCJ|1|51|U|1656
6HCJ|1|51|G|1657
6HCJ|1|51|G|1658
6HCJ|1|51|U|1659
6HCJ|1|51|U|1660
6HCJ|1|51|C|1661
6HCJ|1|51|C|1662
6HCJ|1|51|C|1663
6HCJ|1|51|U|1664
6HCJ|1|51|C|1665
*
6HCJ|1|51|G|2284
6HCJ|1|51|A|2285
6HCJ|1|51|G|2286
6HCJ|1|51|G|2287
6HCJ|1|51|G|2288
6HCJ|1|51|C|2289
6HCJ|1|51|C|2290
6HCJ|1|51|G|2291
6HCJ|1|51|C|2292
6HCJ|1|51|U|2293
6HCJ|1|51|G|2294
*
6HCJ|1|51|C|2340
6HCJ|1|51|A|2341
6HCJ|1|51|G|2342
6HCJ|1|51|G|2343
6HCJ|1|51|U|2344
6HCJ|1|51|G|2345
6HCJ|1|51|C|2346
6HCJ|1|51|A|2347
6HCJ|1|51|G|2348
6HCJ|1|51|A|2349
6HCJ|1|51|U|2350
6HCJ|1|51|C|2351
6HCJ|1|51|U|2352
6HCJ|1|51|U|2353
6HCJ|1|51|G|2354
Current chains
- Chain 51
- 28S ribosomal RNA
Nearby chains
- Chain 81
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C3
- uL4
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain a3
- uL15
- Chain e3
- eL32
- Chain r3
- eL28
Coloring options: