J5_6HCJ_002

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUG*CCAUUGG*CCAAUAG

Length

36 nucleotides

Bulged bases

6HCJ|1|A2|A|525, 6HCJ|1|A2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCJ|1|A2|C|30
6HCJ|1|A2|U|31
6HCJ|1|A2|U|32
6HCJ|1|A2|G|33
6HCJ|1|A2|U|34
6HCJ|1|A2|C|35
6HCJ|1|A2|U|36
*
6HCJ|1|A2|A|519
6HCJ|1|A2|A|520
6HCJ|1|A2|A|521
6HCJ|1|A2|A|522
6HCJ|1|A2|A|523
6HCJ|1|A2|U|524
6HCJ|1|A2|A|525
6HCJ|1|A2|A|526
6HCJ|1|A2|C|527
*
6HCJ|1|A2|G|558
6HCJ|1|A2|G|559
6HCJ|1|A2|A|560
6HCJ|1|A2|A|561
6HCJ|1|A2|U|562
6HCJ|1|A2|G|563
*
6HCJ|1|A2|C|592
6HCJ|1|A2|C|593
6HCJ|1|A2|A|594
6HCJ|1|A2|U|595
6HCJ|1|A2|U|596
6HCJ|1|A2|G|597
6HCJ|1|A2|G|598
*
6HCJ|1|A2|C|638
6HCJ|1|A2|C|639
6HCJ|1|A2|A|640
6HCJ|1|A2|A|641
6HCJ|1|A2|U|642
6HCJ|1|A2|A|643
6HCJ|1|A2|G|644

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain K2

Ribosomal protein S9 (Predicted)

Chain Y2

uS12

Chain Z2

eS24

Chain f2

40S ribosomal protein S30