J5_6HCM_006
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUCC*GGCCGCUGCGGUGAGCCUUGAAG*UGGAGCCGCCGCAGGUGCAGAUC
- Length
- 61 nucleotides
- Bulged bases
- 6HCM|1|52|C|2289, 6HCM|1|52|A|2300, 6HCM|1|52|U|2305, 6HCM|1|52|G|2343, 6HCM|1|52|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|G|1335
6HCM|1|52|G|1336
6HCM|1|52|A|1337
6HCM|1|52|G|1338
6HCM|1|52|U|1339
6HCM|1|52|C|1340
*
6HCM|1|52|G|1516
6HCM|1|52|G|1517
6HCM|1|52|A|1518
6HCM|1|52|C|1519
*
6HCM|1|52|G|1658
6HCM|1|52|U|1659
6HCM|1|52|U|1660
6HCM|1|52|C|1661
6HCM|1|52|C|1662
*
6HCM|1|52|G|2287
6HCM|1|52|G|2288
6HCM|1|52|C|2289
6HCM|1|52|C|2290
6HCM|1|52|G|2291
6HCM|1|52|C|2292
6HCM|1|52|U|2293
6HCM|1|52|G|2294
6HCM|1|52|C|2295
6HCM|1|52|G|2296
6HCM|1|52|G|2297
6HCM|1|52|U|2298
6HCM|1|52|G|2299
6HCM|1|52|A|2300
6HCM|1|52|G|2301
6HCM|1|52|C|2302
6HCM|1|52|C|2303
6HCM|1|52|U|2304
6HCM|1|52|U|2305
6HCM|1|52|G|2306
6HCM|1|52|A|2307
6HCM|1|52|A|2308
6HCM|1|52|G|2309
*
6HCM|1|52|U|2329
6HCM|1|52|G|2330
6HCM|1|52|G|2331
6HCM|1|52|A|2332
6HCM|1|52|G|2333
6HCM|1|52|C|2334
6HCM|1|52|C|2335
6HCM|1|52|G|2336
6HCM|1|52|C|2337
6HCM|1|52|C|2338
6HCM|1|52|G|2339
6HCM|1|52|C|2340
6HCM|1|52|A|2341
6HCM|1|52|G|2342
6HCM|1|52|G|2343
6HCM|1|52|U|2344
6HCM|1|52|G|2345
6HCM|1|52|C|2346
6HCM|1|52|A|2347
6HCM|1|52|G|2348
6HCM|1|52|A|2349
6HCM|1|52|U|2350
6HCM|1|52|C|2351
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 82
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C3
- uL4
- Chain L3
- eL13
- Chain N3
- Ribosomal protein L15
- Chain Q3
- eL18
- Chain Y3
- Ribosomal protein L26
- Chain a3
- uL15
- Chain e3
- eL32
- Chain r3
- eL28
Coloring options: