J5_6HCM_007

3D structure

PDB id

6HCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (stalled monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

CAAAUAUU*AAGGCCGAAGUG*CAA*UCUGGCAUGUU*AG

Length

36 nucleotides

Bulged bases

6HCM|1|52|A|2366, 6HCM|1|52|U|2369, 6HCM|1|52|A|2370, 6HCM|1|52|A|2396, 6HCM|1|52|A|2806, 6HCM|1|52|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCM|1|52|C|2365
6HCM|1|52|A|2366
6HCM|1|52|A|2367
6HCM|1|52|A|2368
6HCM|1|52|U|2369
6HCM|1|52|A|2370
6HCM|1|52|U|2371
6HCM|1|52|U|2372
*
6HCM|1|52|A|2388
6HCM|1|52|A|2389
6HCM|1|52|G|2390
6HCM|1|52|G|2391
6HCM|1|52|C|2392
6HCM|1|52|C|2393
6HCM|1|52|G|2394
6HCM|1|52|A|2395
6HCM|1|52|A|2396
6HCM|1|52|G|2397
6HCM|1|52|U|2398
6HCM|1|52|G|2399
*
6HCM|1|52|C|2805
6HCM|1|52|A|2806
6HCM|1|52|A|2807
*
6HCM|1|52|U|2819
6HCM|1|52|C|2820
6HCM|1|52|U|2821
6HCM|1|52|G|2822
6HCM|1|52|G|2823
6HCM|1|52|C|2824
6HCM|1|52|A|2825
6HCM|1|52|U|2826
6HCM|1|52|G|2827
6HCM|1|52|U|2828
6HCM|1|52|U|2829
*
6HCM|1|52|A|3856
6HCM|1|52|G|3857

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain P3

uL22

Chain R3

eL19

Chain d3

eL31

Chain g3

eL34