3D structure

PDB id
6HCM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit collided di-ribosome (stalled monosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.8 Å

Loop

Sequence
AGAAGACC*GGAUAACUGGCUUGUGG*CUUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU
Length
58 nucleotides
Bulged bases
6HCM|1|52|A|3908, 6HCM|1|52|A|4394, 6HCM|1|52|U|4437, 6HCM|1|52|G|4451, 6HCM|1|52|U|4452, 6HCM|1|52|U|4531, 6HCM|1|52|U|4555, 6HCM|1|52|U|4556
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HCM|1|52|A|3903
6HCM|1|52|G|3904
6HCM|1|52|A|3905
6HCM|1|52|A|3906
6HCM|1|52|G|3907
6HCM|1|52|A|3908
6HCM|1|52|C|3909
6HCM|1|52|C|3910
*
6HCM|1|52|G|4392
6HCM|1|52|G|4393
6HCM|1|52|A|4394
6HCM|1|52|U|4395
6HCM|1|52|A|4396
6HCM|1|52|A|4397
6HCM|1|52|C|4398
6HCM|1|52|U|4399
6HCM|1|52|G|4400
6HCM|1|52|G|4401
6HCM|1|52|C|4402
6HCM|1|52|U|4403
6HCM|1|52|U|4404
6HCM|1|52|G|4405
6HCM|1|52|U|4406
6HCM|1|52|G|4407
6HCM|1|52|G|4408
*
6HCM|1|52|C|4434
6HCM|1|52|U|4435
6HCM|1|52|U|4436
6HCM|1|52|U|4437
6HCM|1|52|U|4438
6HCM|1|52|U|4439
6HCM|1|52|G|4440
6HCM|1|52|A|4441
6HCM|1|52|U|4442
6HCM|1|52|C|4443
6HCM|1|52|C|4444
6HCM|1|52|U|4445
6HCM|1|52|U|4446
6HCM|1|52|C|4447
6HCM|1|52|G|4448
6HCM|1|52|A|4449
6HCM|1|52|U|4450
6HCM|1|52|G|4451
6HCM|1|52|U|4452
6HCM|1|52|C|4453
*
6HCM|1|52|G|4528
6HCM|1|52|G|4529
6HCM|1|52|U|4530
6HCM|1|52|U|4531
6HCM|1|52|U|4532
6HCM|1|52|A|4533
6HCM|1|52|G|4534
*
6HCM|1|52|U|4552
6HCM|1|52|A|4553
6HCM|1|52|G|4554
6HCM|1|52|U|4555
6HCM|1|52|U|4556
6HCM|1|52|U|4557

Current chains

Chain 52
28S ribosomal RNA

Nearby chains

Chain 1
nascent chain
Chain 23
Transfer RNA; tRNA
Chain A3
Ribosomal protein L8
Chain B3
uL3
Chain C3
uL4
Chain I3
60S ribosomal protein L10
Chain b3
eL29
Chain j1
eRF1(AAQ)

Coloring options:

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