J5_6HCM_008
3D structure
- PDB id
- 6HCM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (stalled monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUGGCUUGUGG*CUUUUUGAUCCUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 58 nucleotides
- Bulged bases
- 6HCM|1|52|A|3908, 6HCM|1|52|A|4394, 6HCM|1|52|U|4437, 6HCM|1|52|G|4451, 6HCM|1|52|U|4452, 6HCM|1|52|U|4531, 6HCM|1|52|U|4555, 6HCM|1|52|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCM|1|52|A|3903
6HCM|1|52|G|3904
6HCM|1|52|A|3905
6HCM|1|52|A|3906
6HCM|1|52|G|3907
6HCM|1|52|A|3908
6HCM|1|52|C|3909
6HCM|1|52|C|3910
*
6HCM|1|52|G|4392
6HCM|1|52|G|4393
6HCM|1|52|A|4394
6HCM|1|52|U|4395
6HCM|1|52|A|4396
6HCM|1|52|A|4397
6HCM|1|52|C|4398
6HCM|1|52|U|4399
6HCM|1|52|G|4400
6HCM|1|52|G|4401
6HCM|1|52|C|4402
6HCM|1|52|U|4403
6HCM|1|52|U|4404
6HCM|1|52|G|4405
6HCM|1|52|U|4406
6HCM|1|52|G|4407
6HCM|1|52|G|4408
*
6HCM|1|52|C|4434
6HCM|1|52|U|4435
6HCM|1|52|U|4436
6HCM|1|52|U|4437
6HCM|1|52|U|4438
6HCM|1|52|U|4439
6HCM|1|52|G|4440
6HCM|1|52|A|4441
6HCM|1|52|U|4442
6HCM|1|52|C|4443
6HCM|1|52|C|4444
6HCM|1|52|U|4445
6HCM|1|52|U|4446
6HCM|1|52|C|4447
6HCM|1|52|G|4448
6HCM|1|52|A|4449
6HCM|1|52|U|4450
6HCM|1|52|G|4451
6HCM|1|52|U|4452
6HCM|1|52|C|4453
*
6HCM|1|52|G|4528
6HCM|1|52|G|4529
6HCM|1|52|U|4530
6HCM|1|52|U|4531
6HCM|1|52|U|4532
6HCM|1|52|A|4533
6HCM|1|52|G|4534
*
6HCM|1|52|U|4552
6HCM|1|52|A|4553
6HCM|1|52|G|4554
6HCM|1|52|U|4555
6HCM|1|52|U|4556
6HCM|1|52|U|4557
Current chains
- Chain 52
- 28S ribosomal RNA
Nearby chains
- Chain 1
- nascent chain
- Chain 23
- Transfer RNA; tRNA
- Chain A3
- Ribosomal protein L8
- Chain B3
- uL3
- Chain C3
- uL4
- Chain I3
- 60S ribosomal protein L10
- Chain b3
- eL29
- Chain j1
- eRF1(AAQ)
Coloring options: