J5_6HCQ_002

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CUUGUCU*AAAAAUAAC*GGAAUG*CCAUUGG*CCAAUAG

Length

36 nucleotides

Bulged bases

6HCQ|1|A2|A|525, 6HCQ|1|A2|C|593

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCQ|1|A2|C|30
6HCQ|1|A2|U|31
6HCQ|1|A2|U|32
6HCQ|1|A2|G|33
6HCQ|1|A2|U|34
6HCQ|1|A2|C|35
6HCQ|1|A2|U|36
*
6HCQ|1|A2|A|519
6HCQ|1|A2|A|520
6HCQ|1|A2|A|521
6HCQ|1|A2|A|522
6HCQ|1|A2|A|523
6HCQ|1|A2|U|524
6HCQ|1|A2|A|525
6HCQ|1|A2|A|526
6HCQ|1|A2|C|527
*
6HCQ|1|A2|G|558
6HCQ|1|A2|G|559
6HCQ|1|A2|A|560
6HCQ|1|A2|A|561
6HCQ|1|A2|U|562
6HCQ|1|A2|G|563
*
6HCQ|1|A2|C|592
6HCQ|1|A2|C|593
6HCQ|1|A2|A|594
6HCQ|1|A2|U|595
6HCQ|1|A2|U|596
6HCQ|1|A2|G|597
6HCQ|1|A2|G|598
*
6HCQ|1|A2|C|638
6HCQ|1|A2|C|639
6HCQ|1|A2|A|640
6HCQ|1|A2|A|641
6HCQ|1|A2|U|642
6HCQ|1|A2|A|643
6HCQ|1|A2|G|644

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain K2

Ribosomal protein S9 (Predicted)

Chain Y2

uS12

Chain Z2

eS24

Chain f2

40S ribosomal protein S30