3D structure

PDB id
6HMA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.65 Å

Loop

Sequence
CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG
Length
33 nucleotides
Bulged bases
6HMA|1|A|U|301, 6HMA|1|A|U|451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6HMA|1|A|C|271
6HMA|1|A|C|272
6HMA|1|A|A|273
6HMA|1|A|A|274
6HMA|1|A|A|275
6HMA|1|A|C|276
*
6HMA|1|A|G|295
6HMA|1|A|G|296
6HMA|1|A|G|297
6HMA|1|A|U|298
6HMA|1|A|U|299
6HMA|1|A|G|300
6HMA|1|A|U|301
6HMA|1|A|A|302
*
6HMA|1|A|U|415
6HMA|1|A|G|416
6HMA|1|A|A|417
6HMA|1|A|G|418
6HMA|1|A|U|419
6HMA|1|A|A|420
6HMA|1|A|C|421
*
6HMA|1|A|G|445
6HMA|1|A|G|446
6HMA|1|A|A|447
6HMA|1|A|A|448
6HMA|1|A|U|449
6HMA|1|A|C|450
6HMA|1|A|U|451
6HMA|1|A|G|452
*
6HMA|1|A|U|467
6HMA|1|A|A|468
6HMA|1|A|A|469
6HMA|1|A|G|470

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain V
50S ribosomal protein L28

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1065 s