J5_6HMA_002
3D structure
- PDB id
- 6HMA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 6HMA|1|A|U|301, 6HMA|1|A|U|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HMA|1|A|C|271
6HMA|1|A|C|272
6HMA|1|A|A|273
6HMA|1|A|A|274
6HMA|1|A|A|275
6HMA|1|A|C|276
*
6HMA|1|A|G|295
6HMA|1|A|G|296
6HMA|1|A|G|297
6HMA|1|A|U|298
6HMA|1|A|U|299
6HMA|1|A|G|300
6HMA|1|A|U|301
6HMA|1|A|A|302
*
6HMA|1|A|U|415
6HMA|1|A|G|416
6HMA|1|A|A|417
6HMA|1|A|G|418
6HMA|1|A|U|419
6HMA|1|A|A|420
6HMA|1|A|C|421
*
6HMA|1|A|G|445
6HMA|1|A|G|446
6HMA|1|A|A|447
6HMA|1|A|A|448
6HMA|1|A|U|449
6HMA|1|A|C|450
6HMA|1|A|U|451
6HMA|1|A|G|452
*
6HMA|1|A|U|467
6HMA|1|A|A|468
6HMA|1|A|A|469
6HMA|1|A|G|470
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L28
Coloring options: