J5_6HMA_005

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCC

Length

37 nucleotides

Bulged bases

6HMA|1|A|A|2089, 6HMA|1|A|A|2475, 6HMA|1|A|U|2612, 6HMA|1|A|U|2636

QA status

Modified nucleotides: 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HMA|1|A|G|2084
6HMA|1|A|A|2085
6HMA|1|A|A|2086
6HMA|1|A|A|2087
6HMA|1|A|G|2088
6HMA|1|A|A|2089
6HMA|1|A|C|2090
6HMA|1|A|C|2091
*
6HMA|1|A|G|2473
6HMA|1|A|G|2474
6HMA|1|A|A|2475
6HMA|1|A|U|2476
6HMA|1|A|A|2477
6HMA|1|A|A|2478
6HMA|1|A|C|2479
6HMA|1|A|A|2480
*
6HMA|1|A|U|2527
6HMA|1|A|C|2528
6HMA|1|A|G|2529
6HMA|1|A|2MA|2530
6HMA|1|A|U|2531
6HMA|1|A|G|2532
6HMA|1|A|U|2533
6HMA|1|A|C|2534
*
6HMA|1|A|G|2609
6HMA|1|A|G|2610
6HMA|1|A|U|2611
6HMA|1|A|U|2612
6HMA|1|A|C|2613
6HMA|1|A|A|2614
6HMA|1|A|G|2615
*
6HMA|1|A|C|2633
6HMA|1|A|G|2634
6HMA|1|A|G|2635
6HMA|1|A|U|2636
6HMA|1|A|C|2637
6HMA|1|A|C|2638

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain D

50S ribosomal protein L3

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15

Chain K

50S ribosomal protein L16

Chain Z

50S ribosomal protein L32