J5_6HRM_002
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6HRM|1|1|A|109, 6HRM|1|1|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HRM_002 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.102
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|C|58
6HRM|1|1|A|59
6HRM|1|1|A|60
6HRM|1|1|G|61
*
6HRM|1|1|C|106
6HRM|1|1|G|107
6HRM|1|1|G|108
6HRM|1|1|A|109
6HRM|1|1|C|110
6HRM|1|1|G|111
6HRM|1|1|G|112
6HRM|1|1|G|113
*
6HRM|1|1|C|314
6HRM|1|1|A|315
6HRM|1|1|C|316
*
6HRM|1|1|G|337
6HRM|1|1|A|338
6HRM|1|1|C|339
*
6HRM|1|1|G|350
6HRM|1|1|G|351
6HRM|1|1|C|352
6HRM|1|1|A|353
6HRM|1|1|G|354
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L14
- Chain P
- 50S ribosomal protein L19
- Chain u
- 30S ribosomal protein S16
- Chain y
- 30S ribosomal protein S20
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