J5_6HRM_003
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 6HRM|1|1|U|1556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HRM_003 not in the Motif Atlas
- Homologous match to J5_5J7L_013
- Geometric discrepancy: 0.0673
- The information below is about J5_5J7L_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6HRM|1|1|C|1553
6HRM|1|1|G|1554
6HRM|1|1|A|1555
6HRM|1|1|U|1556
6HRM|1|1|G|1557
6HRM|1|1|A|1558
6HRM|1|1|A|1559
6HRM|1|1|G|1560
*
6HRM|1|1|C|1622
6HRM|1|1|G|1623
6HRM|1|1|A|1624
6HRM|1|1|A|1625
6HRM|1|1|U|1626
6HRM|1|1|G|1627
*
6HRM|1|1|C|1636
6HRM|1|1|A|1637
*
6HRM|1|1|U|1654
6HRM|1|1|A|1655
6HRM|1|1|U|1656
*
6HRM|1|1|A|1682
6HRM|1|1|G|1683
6HRM|1|1|G|1684
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
Coloring options: