J5_6HRM_007
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 6HRM|1|1|A|3568, 6HRM|1|1|A|3954, 6HRM|1|1|U|3955, 6HRM|1|1|U|4012, 6HRM|1|1|U|4091, 6HRM|1|1|U|4115
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HRM|1|1|G|3563
6HRM|1|1|A|3564
6HRM|1|1|A|3565
6HRM|1|1|A|3566
6HRM|1|1|G|3567
6HRM|1|1|A|3568
6HRM|1|1|C|3569
6HRM|1|1|C|3570
*
6HRM|1|1|G|3952
6HRM|1|1|G|3953
6HRM|1|1|A|3954
6HRM|1|1|U|3955
6HRM|1|1|A|3956
6HRM|1|1|A|3957
6HRM|1|1|C|3958
6HRM|1|1|A|3959
*
6HRM|1|1|U|4006
6HRM|1|1|C|4007
6HRM|1|1|G|4008
6HRM|1|1|2MA|4009
6HRM|1|1|PSU|4010
6HRM|1|1|G|4011
6HRM|1|1|U|4012
6HRM|1|1|C|4013
*
6HRM|1|1|G|4088
6HRM|1|1|G|4089
6HRM|1|1|U|4090
6HRM|1|1|U|4091
6HRM|1|1|U|4092
6HRM|1|1|A|4093
6HRM|1|1|G|4094
*
6HRM|1|1|C|4112
6HRM|1|1|G|4113
6HRM|1|1|G|4114
6HRM|1|1|U|4115
6HRM|1|1|C|4116
6HRM|1|1|C|4117
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain C
- 50S ribosomal protein L3
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: