J5_6HTQ_014
3D structure
- PDB id
- 6HTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GUGG*CGC*GUG*CUUA*UC
- Length
- 16 nucleotides
- Bulged bases
- 6HTQ|1|v|U|8, 6HTQ|1|v|G|9, 6HTQ|1|v|U|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6HTQ_014 not in the Motif Atlas
- Homologous match to J5_3ZGZ_001
- Geometric discrepancy: 0.3763
- The information below is about J5_3ZGZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_97113.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HTQ|1|v|G|7
6HTQ|1|v|U|8
6HTQ|1|v|G|9
6HTQ|1|v|G|10
*
6HTQ|1|v|C|26
6HTQ|1|v|G|27
6HTQ|1|v|C|28
*
6HTQ|1|v|G|44
6HTQ|1|v|U|45
6HTQ|1|v|G|46
*
6HTQ|1|v|C|57
6HTQ|1|v|U|58
6HTQ|1|v|U|59
6HTQ|1|v|A|60
*
6HTQ|1|v|U|76
6HTQ|1|v|C|77
Current chains
- Chain v
- P-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: