J5_6I0Y_004

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

6I0Y|1|A|U|1758, 6I0Y|1|A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6I0Y_004 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0562

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6I0Y|1|A|G|1674
6I0Y|1|A|C|1675
6I0Y|1|A|A|1676
6I0Y|1|A|A|1677
6I0Y|1|A|A|1678
6I0Y|1|A|A|1679
6I0Y|1|A|U|1680
6I0Y|1|A|G|1681
6I0Y|1|A|G|1682
*
6I0Y|1|A|C|1706
6I0Y|1|A|G|1707
*
6I0Y|1|A|U|1751
6I0Y|1|A|C|1752
*
6I0Y|1|A|G|1756
6I0Y|1|A|A|1757
6I0Y|1|A|U|1758
6I0Y|1|A|A|1759
6I0Y|1|A|C|1760
6I0Y|1|A|C|1761
6I0Y|1|A|A|1762
6I0Y|1|A|G|1763
6I0Y|1|A|C|1764
*
6I0Y|1|A|G|1988
6I0Y|1|A|G|1989
6I0Y|1|A|C|1990

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19