J5_6I7O_004

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

6I7O|1|2|U|128, 6I7O|1|2|U|132, 6I7O|1|2|A|140, 6I7O|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|2|A|124
6I7O|1|2|U|125
6I7O|1|2|A|126
6I7O|1|2|G|127
6I7O|1|2|U|128
6I7O|1|2|U|129
6I7O|1|2|C|130
6I7O|1|2|C|131
6I7O|1|2|U|132
6I7O|1|2|U|133
6I7O|1|2|U|134
6I7O|1|2|A|135
6I7O|1|2|C|136
6I7O|1|2|U|137
6I7O|1|2|A|138
6I7O|1|2|C|139
6I7O|1|2|A|140
6I7O|1|2|U|141
6I7O|1|2|G|142
6I7O|1|2|G|143
*
6I7O|1|2|C|172
6I7O|1|2|A|173
6I7O|1|2|U|174
6I7O|1|2|G|175
6I7O|1|2|C|176
6I7O|1|2|U|177
6I7O|1|2|U|178
6I7O|1|2|A|179
6I7O|1|2|A|180
6I7O|1|2|A|181
6I7O|1|2|A|182
*
6I7O|1|2|U|203
6I7O|1|2|G|204
*
6I7O|1|2|C|263
6I7O|1|2|G|264
6I7O|1|2|A|265
6I7O|1|2|A|266
6I7O|1|2|U|267
*
6I7O|1|2|A|288
6I7O|1|2|U|289
6I7O|1|2|G|290
6I7O|1|2|G|291
6I7O|1|2|U|292
6I7O|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain V

40S ribosomal protein S8-A