J5_6I7O_005
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 37 nucleotides
- Bulged bases
- 6I7O|1|2|U|638, 6I7O|1|2|U|639, 6I7O|1|2|U|694, 6I7O|1|2|U|813, 6I7O|1|2|G|815, 6I7O|1|2|A|856
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6I7O|1|2|A|636
6I7O|1|2|C|637
6I7O|1|2|U|638
6I7O|1|2|U|639
6I7O|1|2|U|640
6I7O|1|2|G|641
*
6I7O|1|2|U|693
6I7O|1|2|U|694
6I7O|1|2|U|695
6I7O|1|2|C|696
6I7O|1|2|C|697
6I7O|1|2|U|698
6I7O|1|2|U|699
*
6I7O|1|2|G|739
6I7O|1|2|A|740
6I7O|1|2|C|741
6I7O|1|2|U|742
6I7O|1|2|U|743
6I7O|1|2|U|744
*
6I7O|1|2|A|807
6I7O|1|2|U|808
6I7O|1|2|A|809
6I7O|1|2|G|810
6I7O|1|2|A|811
6I7O|1|2|A|812
6I7O|1|2|U|813
6I7O|1|2|A|814
6I7O|1|2|G|815
6I7O|1|2|G|816
6I7O|1|2|A|817
*
6I7O|1|2|U|854
6I7O|1|2|A|855
6I7O|1|2|A|856
6I7O|1|2|U|857
6I7O|1|2|G|858
6I7O|1|2|A|859
6I7O|1|2|U|860
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain BF
- 60S ribosomal protein L19-A
- Chain U
- 40S ribosomal protein S7-A
- Chain X
- 40S ribosomal protein S11-A
- Chain Y
- 40S ribosomal protein S13
- Chain b
- 40S ribosomal protein S22-A
Coloring options: